PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00064g00626.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 470aa    MW: 50700.4 Da    PI: 7.1992
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00064g00626.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-06420442426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C +f  +  C+ G +C + H+
  Peaxi162Scf00064g00626.1 420 KPCIYFNTSRGCRNGVNCVYLHD 442
                               69********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.451416444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4420444IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MKVRLFLSED SPSQVGLGAQ DHLQAKISWP LHAGLPVSDD NLPPGFEATQ PESLWKNKLA  60
QIPVIKWTRP PSFVLDIKWR VVAGEESNEM EIQKQREMRM LEAIYPRESA IPPNPSMVPG  120
EETLHNEQHP PIIPITPIEE EEVPDPSFGS MLPSNAVSSK AQVVQSGVPL SNRSVGNNLP  180
VHGISVPGVA PGMAPDVVAA AQAALTALMA DNSQGNLIDH ELLIKILSDP KIVDQLVTQQ  240
GVGTSSHSLP ATSTQSISSA HNMPNQRPQA SSITPRSLAA VSRADPSYIH TGRTDPLPVQ  300
VSRTELAMPT VAGASNGPFH SAPSRIGPIP SLRPRVPEVV SAPLQSVGAP VTTVSTPSSS  360
VPAPVARDMN YYKSLIQQHG GERQETVPQY SNNRNNQHLG SMQESVNSSN IRDSKPKIMK  420
PCIYFNTSRG CRNGVNCVYL HDASSQQRVG SLPDVQSSKR MKMDREITGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595509.10.0PREDICTED: zinc finger CCCH domain-containing protein 6 isoform X1
TrEMBLK4DGZ70.0K4DGZ7_SOLLC; Uncharacterized protein
STRINGSolyc12g089260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA514779